Advanced

• ImageJ
  • Finding ImageJ commands
  • Sending image regions to ImageJ
  • Accessing ImageJ plugins
  • Sending objects to QuPath
  • Running macros
• Exporting images
  • Export commands
  • Export by scripting
• Exporting annotations
  • Shapes
  • Binary & labeled images
• Command line
  • Viewing command line options
  • Subcommands
  • Passing arguments to scripts
• OMERO
  • Adding OMERO images to your project
  • Browsing an OMERO server
  • Send objects back to your OMERO server
  • Managing OMERO clients