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Full contents:

  • Introduction
  • Getting started
  • Tutorials
  • Concepts
    • Overview
    • Images
    • Processing & analysis
    • Objects
    • Object hierarchy
    • Classifications
    • Measurements
  • Scripting
  • Deep learning
  • Advanced
  • Reference
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  • Concepts
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Concepts

  • Overview
  • Images
    • Introducing pixels
    • From pixels to microns
    • Channels & colors
    • Multidimensional images
  • Processing & analysis
    • Image processing
    • Image analysis
    • Where QuPath fits in
  • Objects
    • Types of object
    • Anatomy of an object
    • Summary
  • Object hierarchy
    • The root object & its descendants
    • Visualizing the hierarchy
    • Understanding relationships
    • Differences from QuPath v0.1.2
  • Classifications
    • Classifications & derived classifications
    • Intensity classifications
    • Double-positive, triple-positive
    • Ignored* classifications
  • Measurements
    • Different kinds of measurement
    • Viewing measurements
    • A warning about summary statistics
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