Advanced

• ImageJ
  • Finding ImageJ commands
  • Sending image regions to ImageJ
  • Accessing ImageJ plugins
  • Sending objects to QuPath
  • Running macros & scripts
• Exporting images
  • Export commands
  • Export by scripting
• Exporting annotations
  • Shapes
  • Binary & labeled images
• Command line
  • Viewing command line options
  • Subcommands
  • Passing arguments to scripts
• OMERO
  • Installing the extension
  • Browsing an OMERO server
  • Opening OMERO images
  • Sending data to an OMERO server
  • Importing data from an OMERO server
  • Managing OMERO clients
  • Scripting
  • Migrating from QuPath Web OMERO extension
• View tracker
  • How to use
  • Analyze