Advanced

• ImageJ
  • Finding ImageJ commands
  • Sending image regions to ImageJ
  • Accessing ImageJ plugins
  • Sending objects to QuPath
  • Running macros
• Exporting images
  • Export commands
  • Export by scripting
• Exporting annotations
  • Shapes
  • Binary & labeled images
• StarDist
  • Getting the StarDist extension
  • Getting pretrained models
  • Detecting nuclei
  • Customizing detection
  • Advanced options
  • Differences from StarDist Fiji
• Command line
  • Viewing command line options
  • Subcommands
• OMERO
  • Adding OMERO images to your project
  • Browsing an OMERO server
  • Send objects back to your OMERO server
  • Managing OMERO clients